rs48296475 SNP Detail

Summary

• ID
  rs48296475
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71764118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCAGAGT TGCTATTTCT
  AGGATGATAA GAGGACGTTC TATAGGTGTA ATGCAAGAAG GCATGGAAAG ATAAAGATGA
  GACAGGAAGG GAAAAGAAAC AGTCAGCCAC TTGCATAGCT CCTGCAACAA CAGTCCATGT
  TAGAAGGGCA GATGAGGGGA AAGAAGGAAG GGATGCTGAA AGGTTAAGGC TTGAGAAGGA
  C
  GTGGGAAGGG GTGAAGCTTT ATAAATGACT GTGACTTATT ACCTGAGTGC CCGAGAGTTC
  AGAAATGTGG AAGAAGGCTG AAGAGATATC TCTGAAGAAT TCACGTGGTA GGCAGGGCTT
  CGAACTGAGA ACTACCCTTA CAGCTCCGTG TTCCAAGTTC CTGAACCCCT GTTTCCTGGA
  GATGCTCGAT TCAGATATGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss133277291	ENSMUSSNP6764499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48296475					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71764118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632005	regulatory region 632005			312 bp distal
Rr632006	regulatory region 632006			1054 bp proximal