rs48294106 SNP Detail

Summary

• ID
  rs48294106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63323262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT GCCCCCGGGT CTCCTTAGGT
  R
  GGAGAGTCTG GTCTCCTCCA AGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146443613	ENSMUSSNP6747644	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48294106					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63323262 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Rr593542	regulatory region 593542	1181 bp distal
Rr593543	regulatory region 593543	within coordinates
Tssr42041	transcription start site region 42041	1766 bp upstream
Tssr42042	transcription start site region 42042	1751 bp upstream
Tssr42043	transcription start site region 42043	1739 bp upstream
Tssr42044	transcription start site region 42044	1675 bp upstream
Tssr42045	transcription start site region 42045	1649 bp upstream