rs48294079 SNP Detail

Summary

• ID
  rs48294079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123027109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccctgcctc ttcttcccAT GGGTTTTGTG
  TGCATATTCT TTATTTAGCT TGCGAGCTAT CTTCTTCCAC TTAGCTTTCA GCTCCTTTAC
  TTACTCTCTC CTACTTGGAG GTCACTCAGC CATCATGAGA AAGACAGGCT ACAGGCAACG
  R
  ACATTCACTT CACCTTGTGA AGAGCCTTTC CTGAAGGTTT GCCCACTGAG TTGAGTTAGT
  GACTTAAGCT TTCTAGCTTT CTAAAACAAG TATGataaat ataaaaaaaa tcaaatataa
  taaGTTTGAA CCAATGATGA ACACGGTCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135760824	ENSMUSSNP2854104	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320918219	CHEV_3_122936378	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48294079					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123027109 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			588 bp proximal
Rr584474	regulatory region 584474			1218 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant