rs48293621 SNP Detail

Summary

• ID
  rs48293621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139971818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT GCAGAAGCTA GCGAGCCGAG
  Y
  CAAAGCTCCA GGGCGCCGGA ATAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147694889	ENSMUSSNP2423061	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48293621					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139971818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15189	CpG island 15189	875 bp distal
Cpgi15190	CpG island 15190	within coordinates
Cpgi15191	CpG island 15191	1311 bp proximal
Gm69798	predicted gene, 69798	1897 bp upstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603403	regulatory region 603403	1819 bp distal
Rr603404	regulatory region 603404	289 bp distal
Rr603405	regulatory region 603405	908 bp proximal