rs48292277 SNP Detail

Summary

• ID
  rs48292277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGACCCT GGGGCCCAGC
  GGCTGACAAA TGACAGTGAG TGTAACTTCC TTTGTTGTTT TACTTCAGAC TCCTCGCTCC
  AGAAAGCCTA TGTTCTAACC TCAACTCTTC CCTAACTCTT CGCTAAGTAA AAGGGAACTG
  TCTGAGGCAG GGGGATGGAT GTCGGACTGG GAACATGGGT CATAGCTCAA GACTGGTTCT
  Y
  CTGAGATAGA ATTTTCCTTG CCTTTCTTCA CAGTAATAAA CCCCCAAAAC TTAGGTGGCC
  TTTTTGGGGG AGTCTATTTC TATTTACCCC TGAAACAGAT AGCCACTCTA GGCCAAAGAA
  AATTTGCTTC CAGTCCAGCT TAGTGAATGG GACAAACTTA TTGGTGTTGT CTGTAGGGAC
  ATGGGTGGCT TGGGCAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553186	ENSMUSSNP954529	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48292277					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623096 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	381 bp distal
Rr602184	regulatory region 602184	87 bp distal
Rr602185	regulatory region 602185	186 bp proximal
Rr602186	regulatory region 602186	1087 bp proximal
Rr602187	regulatory region 602187	1210 bp proximal
Rr602188	regulatory region 602188	1238 bp proximal
Tssr39650	transcription start site region 39650	590 bp downstream
Tssr39651	transcription start site region 39651	389 bp downstream
Tssr39652	transcription start site region 39652	309 bp downstream