rs48291847 SNP Detail

Summary

• ID
  rs48291847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140461115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTCACA ACTACTTATA
  CCCCAGTTTT TCTAGTTACC TCATAGAGAC AAAGAAACTT GTTCTATTCA ATTTCTTGTT
  AAAAAATTGT CTTAATACAA ACACACACAC ACACACACAC ACACACACAC ACACACACAG
  AGTCACACAC ACACACACCC TACTCATTGT AATTCAGGAA CAATTGACAG TTAAATAGAG
  R
  TATCTATCTT TCTGACTATT TATCTATCTA AATATGGACA TTTATAAATT CATATCACAT
  ACCTTTGTGT TTCTACGTTA GCTTGTTGTC TAAATTAATA TAGCTGTTGC TTCTTTTATA
  CTTTCAACAA AGCAACTTAG CAACTTAAAC CAATTATAAT GTTTTGCCCT TGAAATAATG
  CACTAGCTAT AAGCATGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145604036	ENSMUSSNP1987636	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320003524	CHEV_1_142429954	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48291847					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140461115 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			1544 bp distal
Rr419879	regulatory region 419879			1641 bp distal
Rr419880	regulatory region 419880			1006 bp distal