rs48289958 SNP Detail

Summary

• ID
  rs48289958
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:120956154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT CAAAGGAAGC ACCGCTTTGA
  W
  CATACTATCA GCGTCCTTCT GTAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135714754	ENSMUSSNP2380516	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320902838	CHEV_3_120865423	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48289958					SNP	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120956154 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397969	regulatory region 397969			1026 bp upstream
Rr584007	regulatory region 584007			638 bp distal
Rr584008	regulatory region 584008			860 bp proximal
Rr584009	regulatory region 584009			1106 bp proximal
Rwdd3	RWD domain containing 3			Intron
				Noncoding-Transcript-Variant