rs48288694 SNP Detail

Summary

• ID
  rs48288694
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTTCATC TCTACATTGC
  CTGCTGCCAG AGTTTTGTTA ACCTGACACA ACGGAACCAT ACCTGGGAAG AGGGCATCTC
  ACCTGAGGAA TTGTCTCCAT TAGTGGGCTT GTAGGAATGT CCGTGGGGTA TTTTCTTGAT
  TAATGATTGA TCCACACTAG AAGGCCCGGC CCACCATGGG TTGTGCAATT CTTAGGCAGG
  W
  AGCTTAGAAA GTAGATGAAC AATCCGATAA GCTTCTCACC TCTGTGCTTT CTGCTTCAGT
  TTCTGCCTCT AGGTCCAGGT TTCTGCTTTG AGTTCCTAGC CTGACTTCTC TGAATGATTG
  ACTATGGCAT CGAAGCACAA GCCAAATCAA ACCTTTCCTC CCCAGGCTGC TTTTGGTTAA
  ACGTTTTATC AAGGGAGTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135555697	ENSMUSSNP5291692	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320855297	CHEV_3_102078510	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48288694					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181903 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	667 bp proximal
Rr582220	regulatory region 582220	1147 bp proximal
Rr582221	regulatory region 582221	1402 bp proximal