rs48281091 SNP Detail

Summary

• ID
  rs48281091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15260127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCTTGA CAAATAATCA
  TAAAATAAGT ATTAGGCATA TTGATTATTA TGAAACATGT GTGAAATGTG TAACCCTCAT
  AGTCCATCAA GCCAATGAAA AGGAGCAGAA ATTGTTTCAA TATTAGCTTA GGCCTACCAC
  TAACTATGGT TGTCTGTTCC AAGTAGAATT TGTACCCTCC TTTGGTTTGT CTCAGAGATA
  R
  CATGGGCATG GATCAGCTAC CATGATAGTG ATTCAGCTAC CATGTATAGC ACGTCCTGGG
  GAGACAGGGA CACAAAGCAG GTGCTGGAAG ATGTAATTTT TGCTGGCTTC ACTTTTGATT
  TTGAAATGTC TGTTGGCTCA TTCTTGCATC AATCACAGAA CTATTGTTTA TAGTCTTCTG
  CTTACCAGAC ATGTTCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60372997	NES15871318	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48281091					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60372997	NES15871318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15260127 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	790 bp distal
Rr573762	regulatory region 573762	370 bp distal
Rr573763	regulatory region 573763	487 bp distal
Rr573764	regulatory region 573764	1053 bp proximal