rs48274358 SNP Detail

Summary

• ID
  rs48274358
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151866408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCCTT TATGTCCAAA
  GACTCTAAAG GAGAACCTCA CCAGCTTTGG GCGGCTCTTG GCATGCCCTG GCTTGAAACC
  ACATCTCCAC TTCTTGCATC ATCTGCCTTT GTGGTAACAC TGCCCCCTCT TGGTGTTTGC
  CTCTCTTTTA CCTGGGCACT TGTGATGGTA ATAAAGGCCC CCTTAGACAG TCCTTATGTT
  S
  TGATTCCTAA TTTAATTACA TCTGCAAAGA TCCATTTCCC AAATAGGGTC ATACTAACAG
  AACACAGGGA TGAGAGCTTT GGACTTGTCT GGATGGCCAT TATTCAGCCT CCTGCAGTGG
  CCACGGGGCA CTTTTCTGAT TGATGGGCAT GCTCTATGTA GAGACTGTGG CTAGTCTGCA
  CCATTGTCAT GTTGTGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147960949	ENSMUSSNP3492365	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss320561849	CHEV_2_151850224	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48274358					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151866408 () rs orientation: forward

Symbol	Name	Function Class
Gm75398	predicted gene, 75398	180 bp upstream
Gm75402	predicted gene, 75402	within coordinates
Rr374074	regulatory region 374074	within coordinates
Rr567263	regulatory region 567263	63 bp distal
Rr567264	regulatory region 567264	113 bp proximal