rs48273558 SNP Detail

Summary

• ID
  rs48273558
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3966791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGATGG GGACTTTGGT
  TTCCTTCTGC TCAAAGTTGA ATCACCTTTT AAAAATTCCA TAGGATCATG TTCAGTCCAC
  ATTAAAATCT AGGGTAACTC TAGAGGAGAG GGTTGTGTGC AAAAAGGCTT AGAAGGCTGG
  GTTATATCAC AATAAACGCA GACCGTGGAA ATTAAACTAC AAGTCAATGC TGACAAAAAC
  M
  GGAATATCTT GCTTCAGCTG CAGCACGGGC ATGTTTTCTA GGACGGTATC TGAATGCAAG
  TGTCTTCCCC ACCAGGTAAA ATCTTAGTCA AATGTAAGTC ATAGCATTTG AAGATATCAT
  ATGCTTCTGC CCTCCTTGCA GGAACTCACT TTGTCGCCAA CTAAAAATGA AAAGACTCAG
  AATGATCCGA AACGGTCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145944931	ENSMUSSNP2567208	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48273558					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3966791 () rs orientation: forward

Symbol	Name	Function Class
Rr588254	regulatory region 588254	570 bp proximal
Rr588255	regulatory region 588255	923 bp proximal