rs48271719 SNP Detail

Summary

• ID
  rs48271719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142986630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA AATCGACTTA AGGGAAAAAG
  R
  TCTTATTTGG GATTACAGTT CCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147777807	ENSMUSSNP4401337	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321403521	CHEV_4_142849963	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48271719					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142986630 () rs orientation: forward

Symbol	Name	Function Class
Rr604180	regulatory region 604180	971 bp distal
Rr604181	regulatory region 604181	1260 bp distal
Rr604182	regulatory region 604182	within coordinates