rs48268581 SNP Detail

Summary

• ID
  rs48268581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153591597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCACAG TTAAAGTAGA
  AGGAAAACTA TGGAGAGAGC CAGAGAAGGT GAAATCCAAG GAGAATTCAA GTCCCCATGG
  AAAAAGCCTA CAAACACACA AAGACCAACT CAGGAGATAA GCCAGTTGGA CAGAGATGCA
  GCCAGATGAA GGAACTAGCG TAGACAGGCA CGGAGTACTG CCTGGGTGTT ATAGCCCTCC
  Y
  TTTACTGCTT CTAGGTAAAC AGAAGGACAG AAAAAGTGGT GTGCACACTG CATTTAGTGC
  AGGAAGTTTA CAACATTTAA AAGCTGGAGC TTATTTCGCA GTGAAATAAC TTAAAATTTT
  GGCACTTGGG ATTTACACTA ATGCTAGATA AACAGCTAAC GGGATATTGC TGTGAACAAT
  AAAGGAAAAG CTAAAGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136114788	ENSMUSSNP4315666	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48268581					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153591597 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	Intron
Rr587785	regulatory region 587785	325 bp proximal
Rr587786	regulatory region 587786	535 bp proximal