rs48266273 SNP Detail

Summary

• ID
  rs48266273
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134878002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA CCTGCGACCT CAGGCTGCGT
  M
  CTGAAGGCCA GCACTTCCCC AACCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147540596	ENSMUSSNP5062079	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321351025	CHEV_4_134706606	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48266273					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134878002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	within coordinates
Cpgi15062	CpG island 15062	587 bp proximal
Cpgi15063	CpG island 15063	1138 bp proximal
Rr601932	regulatory region 601932	within coordinates
Rr601933	regulatory region 601933	51 bp distal
Rr601934	regulatory region 601934	1315 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	1582 bp upstream
Tssr39602	transcription start site region 39602	1845 bp upstream