rs48262618 SNP Detail

Summary

• ID
  rs48262618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130907931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACACCC AATTTGTTCT
  GTTTTGTAAG AAATGAGGTT TTATTGTGTT GCTCAGGCTG ATCTCAGTCT CCTGGCCTCA
  AGGTATCCTC CCATGTCGAT ACACAGCACA AGGCGTAGGA AAAGTGGCAG ATTTTTTTAA
  ATTAAGTTTT CTTTCCAAAA TATAGATTCA GAAATGTGAG ATTTTCACAA AGTGAACCTG
  Y
  TCACTTCCCT GGCTCTCGAA TCTCCATTGT GGCTCCCGCC CATCCCTTTT GCCCACCAGT
  GGCTGTTGTA TTGACTTCTA TCCCATTCCT TAACTATACC TGTCCTTGGT CTTCGCTGTG
  AACTTGCTTG GGCTGAGAAT CACCTTGTTC CGGGCACATC AGGTCAGTGA GGGTGTTTCC
  AGAGAGTTTT AACAGAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147598253	ENSMUSSNP498286	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48262618					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130907931 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	1609 bp proximal
Tssr26336	transcription start site region 26336	1275 bp downstream