rs48259490 SNP Detail

Summary

• ID
  rs48259490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178306315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGGTGA GGTAGCTAGG
  TGTATGGTAA TGGCAATAGT AATGGAGATA TTTATTGATA CGCCCAAACA GGAAGAGAGG
  AGAGGGCCAC CCGAGCTGCC TGTGTTCCAT GCATGGTTCC CCTTCCCTTT CCCCAGCTGA
  GGTGGTCTTG TGGTGAGCTG GAGTGTACAG GATCGAGGTT AGCTAGCTGA TGAAAGGGGG
  K
  TTCTAGGCTT CAGCCTTTGT GAATGTCATC ATCCTTGGTG GGTTGAGACT TTACTGGGAT
  ACAGCTTTGG GGTTCCCCAC ACCCACTGAT GCTGTGTAGG CAAGCCAAAA GACTCATTGG
  TCCCTTAAAG TTGATGTTGG TGGAGTCCTT ACTCTGGTGT CGAGTCTGGG GTAAAGACAT
  GTCTATTCAC ATCTCCATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148367466	ENSMUSSNP212180	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48259490					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178306315 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Gm74926	predicted gene, 74926	1584 bp downstream
Rr397573	regulatory region 397573	461 bp upstream
Rr572447	regulatory region 572447	1736 bp distal
Rr572448	regulatory region 572448	361 bp proximal
Rr572449	regulatory region 572449	655 bp proximal