rs48256499 SNP Detail

Summary

• ID
  rs48256499
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167378747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCAGGCCTCT GGCAGGTGTG AGGTTGTGAA CAGGCCTCCC
  CTTGTGGGCT TCATTTGCCT TTCTCTTTCC TTCTTACTAA GCAGGCTTGG GGGAGGCTGA
  G
  GGGGTGGAGT GGGGGGCTGC TGAAACAAAG GATGAAAGGG ATGAAAGGAA GCCTAGCCAG
  GTGTGGATCT GGAAGAGAAA ACAGGACTGG AGGAAGGCAG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148264060	ENSMUSSNP4363406	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48256499					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167378747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12746	CpG island 12746	916 bp proximal
Gm11474	predicted gene 11474	1385 bp upstream
Gm75792	predicted gene, 75792	within coordinates
Rr397509	regulatory region 397509	1082 bp upstream
Rr570626	regulatory region 570626	within coordinates
Rr570627	regulatory region 570627	488 bp proximal
Rr570628	regulatory region 570628	1134 bp proximal
Snai1	snail family zinc finger 1	1368 bp upstream
Tssr21819	transcription start site region 21819	1365 bp upstream