rs48255529 SNP Detail

Summary

• ID
  rs48255529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCAAGA CCACCACACC
  AGCCACTACC GCTACCGAGA CGACAGCGAT GACGGCAATG ACGCCGGCGG TGAGGCGCTT
  CATGGAGAAC TGGGGGGGCT TCTCGTCCAG GTAGTAGATG AGCGTCCGCT CCACATGCAG
  GGGTTCCCCA CGCACCTGCA CGTCCAGGCC GCGGCGGCCC ATGAACAGTG ACTCGCCTTT
  R
  ATGTCCCTTT CGAAGTAGTA GGCGGCATCA GCGATGTCCA CGTCTCTCAA GCCCTTCTGC
  GACGCGTTCT GCCGAAGCTC TATCTGAATG GTGGGCTCCT CATAGTGTAC CGCGGATAGG
  AAGCTGGGGT GCAGCTTGTA GCGTTCTTGG AAGAGCCGCC GCAGCTCGGA GTCTAGGTCA
  GAGTGGTTGA AGGCTCGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894263	NES15959600	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48255529					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894263	NES15959600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1627 bp distal
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1729 bp upstream
Rr368087	regulatory region 368087	1662 bp downstream
Rr631666	regulatory region 631666	1740 bp distal
Rr631667	regulatory region 631667	1239 bp distal
Rr631668	regulatory region 631668	223 bp distal
Rr631669	regulatory region 631669	199 bp proximal
Rr631670	regulatory region 631670	750 bp proximal
Rr631671	regulatory region 631671	751 bp proximal
Rr631672	regulatory region 631672	923 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	Coding-Synonymous
Tssr1869	transcription start site region 1869	1697 bp upstream
Tssr1870	transcription start site region 1870	1566 bp downstream
Tssr1871	transcription start site region 1871	1217 bp downstream
Tssr1872	transcription start site region 1872	254 bp upstream
Tssr61254	transcription start site region 61254	1372 bp upstream
Tssr61255	transcription start site region 61255	290 bp upstream
Tssr61256	transcription start site region 61256	159 bp downstream
Tssr61257	transcription start site region 61257	650 bp downstream
Tssr61258	transcription start site region 61258	748 bp downstream
Tssr61259	transcription start site region 61259	793 bp downstream