rs48254433 SNP Detail

Summary

• ID
  rs48254433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86713364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGCCCGCCCA TCCTTACTTT GACCTTGGAC ACCAGTGAGC
  CCACCCATCC TTACTTTGAC CTTGGACACC AGTGAGCCCG CCCATCCTTA CTTTGACCTT
  R
  GACACCATTG AGCCCGCCCA TCCTTACTTT GACCTTGGAC ACCAGTGAGC CCGCCCATCC
  TTACTTTGAC CAGTTCCATC ACTAGAAAGA GGTCAGTTGC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135449077	ENSMUSSNP7053464	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48254433					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86713364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			1722 bp proximal