rs48254162 SNP Detail

Summary

• ID
  rs48254162
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136642267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TCAGCAGGGT GCTGGGGCAG
  A
  GGGCCCGTGG AGAGCACAGG GGCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321359240	CHEV_4_136470871	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48254162					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136642267 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	1989 bp upstream
Rr602498	regulatory region 602498	1802 bp distal
Rr602499	regulatory region 602499	778 bp distal
Rr602500	regulatory region 602500	192 bp distal
Rr602501	regulatory region 602501	1435 bp proximal