rs48253801 SNP Detail

Summary

• ID
  rs48253801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152722048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTTGAC TAAGTGCTTC
  AGTGAGCCAA GAAATTAATC ATAATAAAGA ATTTAGAAAT CAGGAAGGTT TATCAGAGAA
  AACATCCTGA AAGATAGAAC CAGTGAAAAT TGCATTAAAT TTAGATTACT GTTGCTAGCG
  TAGTTAGGAG ACGTACTGCA AATGTCAAAT ATAAAGGGAG ACAGTAAGGC TAGAGAATGC
  R
  ATCAAAGGAA GTGAGAGAGA AAGCCGAGAT GGCAGAGGCA CAAACTTCAG TGCTGGAGTT
  TGCATGTTGC GCTTGGTGGT TTTGGTTTCC TTCTGTGTTT CTGAAAAGCT TTAAAGGTGA
  ACACGAGTGT CCATGGCTCA AACCTTTTCC TGTTTGGCCG ATTTAAATTC CTCCCTCACT
  CCACTTACAC ACCCATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136105605	ENSMUSSNP6181513	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321029574	CHEV_3_152679375	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48253801					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152722048 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	1648 bp proximal