rs48253381 SNP Detail

Summary

• ID
  rs48253381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29922876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACAAAC AAAGGTAGTA
  AAAATCTAAA AATGGGCGTG TGTGGAATGC ATACCAAATT CATGGTGGTA ATTACTTCCA
  GAGAAAGAAA TAATACTGGA GGGTAGTCTG AAGCGAGTAT GGCAGATGTT ATACTCGTGT
  AATCTGAGTA GAAGATACTT TAATGTATCT TATAATTATC TGCAAATGAA ATCTCATTAT
  Y
  AATACTTTAA AAATAAGGAC AAAGTTCAGC AGTGTTTACC TTCCTGACTA CTATTTCCTG
  ACTTTTCTAG CCTAATACAT ACATATACAT ACAAATACAT ACATGTATAC TTACATTTAC
  ATTAATGAAC TAATGATTGA CATATTTAAA ATTTAAAGTT GAGATTTGTT CCTGGCCACC
  CCCAGAATTT GAAACACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133092391	ENSMUSSNP3400117	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48253381					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29922876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr627673	regulatory region 627673			486 bp proximal
Strip2	striatin interacting protein 2			Intron
				Noncoding-Transcript-Variant