rs48248684 SNP Detail

Summary

• ID
  rs48248684
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155235502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGTAA GGGGTGTGCA
  GTCAAAGTAA AGTTTAGATG CTGATGATTT TCTATTGACT GTGTTTCAAA CCTAAGAGCT
  CTGAATTTCA ACACAAATTC ACATAAGATA GTTTTATTTA TACTACATTA GGCTCTGTTC
  CACTTCGCTC AAACTGTGAC ATTATATTTT CAAACCCATT GCTTTGCCAT CGATTTTACT
  M
  TGGTCTCCTG GAGTTGTTAC TGAGCTGATG TTTCCTATAT GAGATGCGCA GCCAAATAGC
  TATTTTAAGA GAAAACTCAT CTGTATGGAA AGATGAGCAC TTCATTTTGT ATTTTATTTG
  GTGCTTCATA GAGGTTGCAA TAGTTTATAT AATGCAATGT GTTATTTCGA AGGTCAGAGA
  AAAATATTTA CTATTTTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61103993	NES16605856	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48248684					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61103993	NES16605856	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155235502 () rs orientation: forward

Symbol	Name	Function Class
Rr375954	regulatory region 375954	1617 bp upstream
Rr587935	regulatory region 587935	1144 bp proximal