rs48248482 SNP Detail

Summary

• ID
  rs48248482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101954509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCGGCCA TTCTATGTGC
  TGTAAAATAT TTGGCTTGTA GCTCTTCCAT CCCAGTCTTG ATCACCCAAA TAAGTCCCCA
  GGCATCTCTA AGTGTCCCCA ACAAACCCAA TCATTCCCAG TTGACAATCA TTCTTTAAGG
  ATAAGCTTGG GATTCTGTGG GTAGACTCAC AATGGCAGGC ATGAGTCATG GATGGGGAAG
  R
  AAGGGAAATG GGGCTGCTGC CTCTGGACCT GAAAAGTTGT TCATTCCCTT TGGATCTTAC
  ATGGTCCTTC TAAGGTGCCC TCAGAAGTAC AAAACATCTC TCAGCATCTT CTCTGGTTGC
  TACATACCAC TGTCCTTAAT GGCTGTTCCG TTATTAACCC TTCAGCCTTC AAGAGTGTAG
  CCTTTCCCTT GAGCTGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854056	CHEV_3_101851116	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48248482					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss135552925	ENSMUSSNP5234349	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101954509 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	1860 bp upstream
Rr407227	regulatory region 407227	1644 bp proximal
Rr582165	regulatory region 582165	1906 bp distal
Rr582166	regulatory region 582166	1999 bp proximal