rs48247357 SNP Detail

Summary

• ID
  rs48247357
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18841659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGATAC TTATGTATAG
  AACATAGAAA TAGCAACAGA ACAGCAGCAA TGAACTAGTG GGCAGGGGTA GGAAAACAGA
  GAGGTGGGAT ACCAGAAAGG AACTTTTCAA AGTTCTTCCC TATATGAAAA TGTTCTTTTG
  TAGTCCAATA CCATGTACAG TGAATACACT TTTACATTGC CAATATTCCT CCTTTGCAAA
  M
  TCTTGTACTA AACTCTGACG TAGAAGCAAT ATCTTTATCC CTATCAAATT CTAGCAAGGT
  AATGTTACAG TATTTATTTC AGTCAAGAGA ATGCTTTACA AAGTCAGACA AAGTTGAAAG
  AATAATGACA TTCAGATCAT CTCGTTTTAC AAATCTTGCT ACAGATTGTC CACTCAGGAC
  TTTACCCTTG GACATTTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60374585	NES15887913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48247357					SNP	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60374585	NES15887913	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18841659 () rs orientation: forward

Symbol	Name	Function Class
Gm65711	predicted gene, 65711	within coordinates
Rr374612	regulatory region 374612	839 bp upstream
Rr573923	regulatory region 573923	100 bp proximal