rs48244778 SNP Detail

Summary

• ID
  rs48244778
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41360411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT CCCCAAATAG GATTTTAAAG
  W
  CAAGTACATT ACCTCTTGTT GTTAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60600953	NES16305516	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T		A	T	T	A
ss144675398	ENSMUSSNP56175	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss322633634	CHEV_8_41992728	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48244778					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600953	NES16305516	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41360411 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77023	transcription start site region 77023	1754 bp downstream
Tssr77024	transcription start site region 77024	1550 bp downstream
Tssr77025	transcription start site region 77025	1503 bp downstream
Tssr77026	transcription start site region 77026	1093 bp downstream
Tssr77027	transcription start site region 77027	764 bp downstream
Tssr77028	transcription start site region 77028	659 bp downstream
Tssr77029	transcription start site region 77029	489 bp downstream
Tssr77030	transcription start site region 77030	526 bp upstream
Tssr77031	transcription start site region 77031	672 bp upstream
Tssr77032	transcription start site region 77032	1031 bp upstream
Tssr77033	transcription start site region 77033	1294 bp upstream
Tssr77034	transcription start site region 77034	1357 bp upstream