rs48241584 SNP Detail

Summary

• ID
  rs48241584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35402937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCAGC CCCATGATCC
  ACAGTTTTAA TGACATACAT GCCTAGTCAT GCACAGATCT AAGATAGTAA TTGGGAATTT
  CCTCTTAAAA ATTCACTCTG AGCACCCTGT TCATCTAGAG CTGGTTCTGG TTGGCTCTAC
  TCATTTCCTT CTAGTTTCAG GATGTTTGAC TTTGAACTAA CTACAAGTGG GTAGTTGTTG
  Y
  GGAGCTCTTA GGGCAGAATG GCCAGTTGCT TTGCTTAGAC TGATGTATGT GGGGTTATTG
  GTTGCTAAGC TATCCCTGCA AACTACATGC CTCAGAGGGA AGATCTTATG CCAAAGCCCT
  AACTCAGTGG TTTTTGTTTG GTGTGATTTT GTTCCCCAGT GGATATCTGG CATTGTTTTA
  AGGTTCTTTT TATGTAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877166	NES15975771	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48241584					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877166	NES15975771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35402937 () rs orientation: forward

Symbol	Name	Function Class
Rr628509	regulatory region 628509	205 bp proximal