rs48241453 SNP Detail

Summary

• ID
  rs48241453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGGTAT CAACCCCAGG
  CCATTAGGCT TGGTGGCAGG TACCTTTACC TACTGAGCCA CCCCATCAGT CCAAATTTCT
  ACTTTTTAAG TAGAAATTAT GCAATAAAAG GCTGTCTCAG CTTTTCAGAT GGAGCATTTT
  TCGTTCTACT CTTCAGAATC ATAGATTCAG GTGGTGGACG TCATCTGATT CTCTTTTGGA
  Y
  GATTTCTCAT CAGTTGATCC CTCTCCATTT TCTATCCCAG TTTCCTTTGG CCAAAAGTAC
  TAAACAACAC TGTAAACATC ACCCAGCTTC ATACAGCTGC AGTAACCCAG TTACCGAGGT
  CGTGCTCGTG TGTGTGGCCC CCCACTACTG CTTCCACAAT TACTGTCCAT TGCATATTTT
  ATACAATGAA TACTGTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61095960	NES16609919	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	T		T	C	C		T
ss321009521	CHEV_3_145769866	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48241453					SNP	C	C	C	C	C	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61095960	NES16609919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1089 bp upstream
Rr586924	regulatory region 586924			243 bp proximal
Rr586925	regulatory region 586925			1218 bp proximal
Tssr36027	transcription start site region 36027			1087 bp downstream
Tssr36028	transcription start site region 36028			1107 bp downstream
Tssr36029	transcription start site region 36029			1145 bp downstream