rs48240873 SNP Detail

Summary

• ID
  rs48240873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116023308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTAGGTA AAAGAGTTGC
  AGACTGCCAC CACTCTCACT GCTAGGAGCC GATAAGAACA CAAAGCAACA CAACCATAAC
  TTATACACAG AGGACCCAGC ATAGACCCAT GCAGGCTCCA TGGTTACCAC GTCAGTATCT
  ATGAATCTAG ATGAGTCCTT CTTAGGTGAT TCTCTGAGCG TTATTGTGGT GTCCTGGACC
  R
  CTCTCCTACA ATTCTTCCTC CCCTTCTCCC ATGGGGCTTC CTGAACTAAT GCTTGGCCAT
  GGGTCTCTGC ATTTGCTTCC ATCCACTGCT GGATGACCCT CTCTGATAAC AAATGGGCTA
  ATCCAGTCTT TGAATATAGC AGAACAACAG TGGGAATCAT TTCATTGACT TTTTTTGCCA
  GTTATGTTTG GCTCTATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437847	NES15932540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48240873					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437847	NES15932540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116023308 () rs orientation: forward

Symbol	Name	Function Class
Rr583675	regulatory region 583675	988 bp distal
Rr583676	regulatory region 583676	437 bp distal