rs48236221 SNP Detail

Summary

• ID
  rs48236221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50754737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAGTTA TTCCATGAAA
  CACACGTTGA GGTCCCGTCC CTTTATGGGC CTCAGAGAGC CTTTACAGTG GGCAGTTGCT
  GGTGAGAAGA TGAATTGCAA AGCAAAAAGC AAATTTTGGG TTTTACTCAC TTGAAAATGA
  TCTAACAACT GCATTCTGAG TGATGTAAAT TTACACAGGT CTCATTAATG TCCTCTAGAT
  Y
  CCATATGACC TTGTTTATGC TCCTACTAAT ACATTCATAA AAGGGGGCCA ATTAAGACTT
  GTAACAGGAC CACAGCCTCA GCAGAGATGG GAGCCAGGCT GCAGGGTAGG TTGGGACAAT
  TGACCCCTGG TTATAAATAA TGCTATATCC CACCATGTTA TCTGCCTGTG GCTTGTGGCT
  CGTATGCCCT CTAACTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133184561	ENSMUSSNP3982595	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48236221					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50754737 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	1478 bp distal
Rr630066	regulatory region 630066	within coordinates