rs48235943 SNP Detail

Summary

• ID
  rs48235943
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCGGGGG CGGGGCTAAG ACGGCTCCAA GGCAGGCAGA
  GAAACCCTAC AGCCCAACGG ACGCGAGCAG GGCACTCGTT GATAGGCTGG GTAATCAACA
  M
  CAAGCGTGAT TATTGCAGCG GGGAGTGAAG GCACTAAGGA AGCCTGGAAC CAATTAATTG
  CTCCTGTAGA GAAAACAGCC CAGGGCTGGG CTCTGCTGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013329	PARCsnp_1.20743	PARC_SEQ	INBRED	f	SNP			A	C
ss120015554	PARCsnp_1.10923	PARC_SEQ	INBRED	f	SNP			A	C
ss146197871	ENSMUSSNP5658754	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320126700	CHEV_1_174563283	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48235943					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460719 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	215 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	within coordinates
Rr423641	regulatory region 423641	514 bp distal
Rr423642	regulatory region 423642	373 bp distal
Rr423643	regulatory region 423643	96 bp distal
Rr423644	regulatory region 423644	within coordinates
Rr423645	regulatory region 423645	653 bp proximal
Tssr10245	transcription start site region 10245	77 bp downstream
Tssr15247	transcription start site region 15247	343 bp upstream
Tssr15248	transcription start site region 15248	283 bp upstream
Tssr15249	transcription start site region 15249	209 bp upstream