rs48234121 SNP Detail

Summary

• ID
  rs48234121
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:120954053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAACTAC TATTTTCAGA CCCCATCCGG AATCAGAGGC
  AGTAGCTATT GCAAAGACCA TATAATATTT TCTTTTACAT ATGTAATGTA TATAGTATTT
  W
  TAAAAAAACT TCTCTAAATA TTACAGCATA CATGCTTCTA AAAGTTATCA CATGCTTCAA
  GTGTCTTTGT TCCTCCTTCC TTCTTCTACT AACATACTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135714709	ENSMUSSNP3706462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48234121					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120954053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584007	regulatory region 584007			1442 bp proximal
Rwdd3	RWD domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr35395	transcription start site region 35395			1172 bp upstream