rs48231368 SNP Detail

Summary

• ID
  rs48231368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152048995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGGCCACA ATGTGTGTGT
  GTGTGTGTAC ACGTGTGTGT GTGTGCATGT GCATGCGTGT GTGCCTGCTT GAATTTCTGT
  GTACCGCATG CGTGCAGGAA CCTAAGGAGG CCAGAAAAGG GCATCAAATC TCTTAGACTT
  GGAATTACAA GTGTTTGTGA GCCGCCAAGT GGCTGCTGGG AAACTAACTC AGGTCCTCTA
  Y
  GGATTCTGGG AAACACTCTC AGCTGCTCTT CAAGAGCATC AAGTGCTCTT AATGGTTGAG
  GCATTTCTCT GGCCCTTCCT AGCTTATTTT AAAATTATTA TTATTATTAT TATTAAAATT
  GTGTGTGCGT GTATACACGT GTGTGTGTGC GTGCATGTAA GTGATAGTAT CTTTGGAGGT
  CTGGGTATCA AAGGTGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136102554	ENSMUSSNP6075557	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321028694	CHEV_3_152006322	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48231368					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152048995 () rs orientation: forward

Symbol	Name	Function Class
Rr587533	regulatory region 587533	within coordinates