rs48229824 SNP Detail

Summary

• ID
  rs48229824
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3423209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCATCTG TAGATGTTAT TCCTTGCCAG AGAAGTCATT
  TTGTTGTATT AAAATTCCTC TCTAATGTGG TATGTCTGAA TACCTATATG TGGTATGTGC
  G
  TGTGAAATGT GGGGCTAGTG GGATCTCTGC TTTTCCATTA TCTCCCACAA TGTCAGCTTT
  TCTTCATTAA GTCCTTGTCT GTTTGAATTA AGGGGAAAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132927512	ENSMUSSNP380898	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48229824					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3423209 () rs orientation: forward

Symbol	Name	Function Class
Rr378836	regulatory region 378836	1153 bp upstream
Rr625969	regulatory region 625969	1316 bp proximal