rs48227286 SNP Detail

Summary

• ID
  rs48227286
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77003897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTCATC CGCCTTCAAA
  CCTGGAGTCC CTGTCCAGGT GAAAAGGGCA CAGGGAGGAA GAAAGCAATC TAGAGGACTG
  TAGTCCACAT TTTTTTAAAA GAATACAAAT GATTGATTGC CCTGCACTCT TTTTCAAAAC
  TATTTCAGAG GCGAGGATAG GTCCATGTGC TGTCTGTGCC TGGCAGGTCT TTGTGTGCAA
  S
  TCCACGTGTG TTTTTCCATA GTTATACTTA GCATGTGCAC GTGTGTGTCC GATGACATGT
  ATTCGTGCAC ACATACATGT AGGGGCATGT CCTGGATCTC AGTAATCCTG TCTCTCTTTG
  TATTCATGTC TGTCTACCTG GAAGCCATGC CCATGTGGGG AGTCTGAGGT AGACTTGGGG
  GAAGGAGAAG GAGTTTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373567	NES15269449	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48227286					SNP	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373567	NES15269449	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77003897 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	1546 bp upstream
Cpgi1754	CpG island 1754	1355 bp distal
Gm67721	predicted gene, 67721	860 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	1413 bp distal
Rr434421	regulatory region 434421	1207 bp distal
Tssr94211	transcription start site region 94211	1417 bp downstream
Tssr98227	transcription start site region 98227	1539 bp upstream
Tssr98228	transcription start site region 98228	1507 bp upstream