rs48226245 SNP Detail

Summary

• ID
  rs48226245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108307475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTCTGGGATT GCAGGCTCAG GCCGCTGTGT CTGATAGTAC
  ATGGGTGCTA GGTGTCCTAA CTGAAATCCT CATGCACGTG CCGCCGACAC TTACCAGCAG
  W
  GTCAGTTCTC CAGCCCTTTA AGCAGTGGTG GCTTGTTGGG TGCTTGTCTT GTTGGTCACA
  CAAGTCCTTG TAACAGAAAC TGTAGGCAGG CACTGAGGGA G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133499668	ENSMUSSNP6900098	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48226245					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108307475 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399812	regulatory region 399812	1904 bp downstream
Rr636077	regulatory region 636077	within coordinates