rs48224396 SNP Detail

Summary

• ID
  rs48224396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41353981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTA CAGAGTGAGT TCCAGGATAG
  Y
  CAGGGTACAC AGAGAAACTC TATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146402128	ENSMUSSNP7003319	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325809393	CHEV_19_41440032	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48224396					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41353981 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1919 bp upstream
Rr547615	regulatory region 547615	136 bp proximal
Rr547616	regulatory region 547616	835 bp proximal
Rr547617	regulatory region 547617	1601 bp proximal
Tssr159300	transcription start site region 159300	1889 bp upstream
Tssr159301	transcription start site region 159301	1690 bp upstream
Tssr159302	transcription start site region 159302	1607 bp upstream
Tssr159303	transcription start site region 159303	1585 bp upstream