rs48223895 SNP Detail

Summary

• ID
  rs48223895
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145657178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTGAGA CCCTCAGCCT
  CAGCCTCAGC ACCCCCTTCA GCCCTGAACC CCCTCGGCTT GTTTAACTCT TCCAGGCCGG
  GAACATGGCT CCCTTTTCAG CACCCTTTAA CCACACAATC ATGAAGTGCT CATTCACTGA
  CAAGCCCTCT GGGTTTCTCT TCTCCTCAGT TCACTTAAGA TAAAAGAAGT TGCAGAGAGA
  S
  AGGAGACAGC AGTCTGTCCT CTGACTGTAC GTTAAATGTC CCCAAGGGCT CACATGTTGA
  AAGGCTCAGT CACCAGCCTG TGTCATTACC AGGAAGTGGT GGTGCCTTTA GAAGGCAGGA
  CCTTGTGGAA GGAAATGATG TCACAGGCAT TCGTCCTGAA GGGACCCCCC CCCCCCGGGG
  GTCCAGATCC TTCCTCTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136040900	ENSMUSSNP3869830	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48223895					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145657178 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	469 bp distal
Rr586882	regulatory region 586882	within coordinates
Rr586883	regulatory region 586883	1239 bp proximal