rs48221715 SNP Detail

Summary

• ID
  rs48221715
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172315437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA TTTTTATCTC CTGGGTGGGG
  M
  TTATACACCT AGACTTATAA GTAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011475	PARCsnp_1.19816	PARC_SEQ	INBRED	f	SNP		A	C
ss120014483	PARCsnp_1.09852	PARC_SEQ	INBRED	f	SNP		A	C
ss146193460	ENSMUSSNP6335317	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320125670	CHEV_1_174418001	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48221715					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172315437 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70813	predicted gene, 70813			1450 bp upstream
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			977 bp distal
Rr423587	regulatory region 423587			577 bp proximal
Rr423588	regulatory region 423588			1817 bp proximal