rs48220681 SNP Detail

Summary

• ID
  rs48220681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131109073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTGGA AGCCCACCCC
  ATGCGCCATG CCTCAGCTCC AATAAGGCCA CACCTCCTGA GCCTCTCCAA TCACACCACC
  AACTGGGGGC CGTGGGTTCA AATGCCCACG ATGGGGAACA TGTCATTCAA CAGAGGTTAT
  TGGTAAGTTG GCACTGCATC TCAACAGCAG GACTGCATCT ATCAGCAGCT CTGGTGACAC
  R
  CACACGCTGA CACTCAGGTA CCTGGTGAAC AAAGCTTGGT TTGCTGTCTT CCTATCTCTC
  AGGAGATAAA AATGTCAGGT TGAATATCAT CACAGCGCTC CATCACCTCT AGACAGAATG
  GCTTCATTAT CTGGAGTGAA TGAAGGCTCT TTGTAAGCCC GTGACCACAG CGATCTCTGA
  ACAGAACACC CTATAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61081008	NES16597781	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48220681					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61081008	NES16597781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131109073 () rs orientation: forward

Symbol	Name	Function Class
4930534D22Rik	RIKEN cDNA 4930534D22 gene	within coordinates
Rr585332	regulatory region 585332	588 bp proximal