rs48219915 SNP Detail

Summary

• ID
  rs48219915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145121828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGCTT TTGTGTAAAG
  GGCCAGTGAC TGAATGTTTA AAATTCTGAG CCATATGGGT TCTGTTGCAG GCTCTTAGCT
  ATGGCACTGT ACTGTGAACC CAGTCACAGA CAACAATGAA TGAATGAGCC TGGCTGTTTC
  CCGTGAAACT TTATTTATAA AAACAGACAG TGGGCATGAA TGGGCCGCCG GCTGTAGTGT
  Y
  TCTTCCTGCT CTGCCATGTT ATAGTTGTTC TAGGATGTGG CAGCTTTCTT GTGTCTGTCT
  TATGTGCACC CTGTTTTATT AATCTTTTGT CATTAACAAA AAAGCAATGA ACACAAATAT
  GATTTCTCTG TATCTTAGTT TCAAATCCAA AAACCAATTC AAGTTAGCAG GCAGGTAGTG
  CTGCCACGGG TCACTGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61093871	NES16613558	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48219915					SNP	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093871	NES16613558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145121828 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1841 bp proximal
Rr586780	regulatory region 586780			1961 bp proximal