rs48217829 SNP Detail

Summary

• ID
  rs48217829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG TATCAGAACC TATGAACTTA
  M
  AATTGTAGGC ACCATGTGAA TGCGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147338545	ENSMUSSNP6951074	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320476618	CHEV_2_119489703	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48217829					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494448 () rs orientation: forward

Symbol	Name	Function Class
Gm75025	predicted gene, 75025	1137 bp downstream
Gm75032	predicted gene, 75032	1126 bp upstream
H3f3c	H3 histone, family 3C	1659 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1146 bp upstream
Rr397235	regulatory region 397235	995 bp downstream
Rr563557	regulatory region 563557	1180 bp distal
Rr563558	regulatory region 563558	656 bp distal
Rr563559	regulatory region 563559	1965 bp proximal
Tssr25825	transcription start site region 25825	1132 bp upstream