rs48217827 SNP Detail

Summary

• ID
  rs48217827
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154264716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTTGAT TGCAGAGGCG
  AAGAGACCCC AAGCCCAGAA CTTGTCCTGC TTATATAGGC CTAGGAGAGG CGTGTCTCAC
  ACCCGGATTG GTTATGCATG GGTTATGCTT ACTACCTCAT TTGCATGTCT CTCATCTGGT
  TAACTTCTCT TTCATCTGAT TGGTTAACTT GTCTCTCATC TGATTGGTTA ACTTGTCTCT
  T
  ATCTGATTGG TTAACTCTCA AAACCTCATC TTGGCAAAAA AAAAAAAAAA AACAAAAACA
  AAAACAAAAA AACAAAACCT TTACTGCCTA TGTATACGTG GTGGCCAGTG GTAGCCAGCG
  CCACCCAGCA ATAGCACATG TGGCATCCCA CAGCAGACAT CCCAGGATGC ACTGGAATCC
  CAGCCCCTCA GACTAAATTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148099227	ENSMUSSNP1003547	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48217827					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154264716 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr377451	regulatory region 377451	within coordinates
Rr606100	regulatory region 606100	735 bp proximal