rs48214675 SNP Detail

Summary

• ID
  rs48214675
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTTGTGT AATTAGGGAG
  GGCTGGGACC TCGTGGAGCC TCTGGCGTCC TGTCCACCCC TACAGGCAAA GCCAGCGCCA
  TGTTCCACTC AGTGGCTAGC TAGTTTGTGG TAAAGTAAGA AAAGCCAGCA GGCTGTCCTG
  TGGAGCAAAG CTTAAACCAG AAACAAATAG AAGGGACAGC TGGACTCTGA ACTGGGTCCC
  S
  TGTTAATTTT TCACAGAACT GTGAACAGAT TAAAGTCCCC TCACAGTATA GCCTTTCCAC
  CGTGATCCCA AATGGTAAAT TCAAACAGAC ACACACTTAA AATGGCCCAG CAGAGCCTCA
  AAAGACTCCA CATTGGCCCC AAGACTACTG GGTCCCAGTT AGGATTTATC CAAGTCATTT
  TGGGTCCCCA AATTACTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147543361	ENSMUSSNP304502	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48214675					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1388 bp distal
Rr398589	regulatory region 398589	1820 bp downstream
Rr601980	regulatory region 601980	1707 bp distal
Rr601981	regulatory region 601981	1882 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1803 bp proximal