rs48213870 SNP Detail

Summary

• ID
  rs48213870
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143746815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGCCGTT CAGTTCTACA TTCAGATATC TTAGATATGA
  GGTCTAATTT CTTGATAGGA GTATATCTGT GCTCTCTTCC TCCAAACTTC CACCTCTCAG
  K
  GAACCTGGCA GCTGTCTCCT TTATATTCAT TCACATTGGT CACAGAGGCC AACTCTATGG
  CTTCCCTTTG TGGATGGCTT GCTGCCTGAA GACCTGGTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147774527	ENSMUSSNP5316439	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320535035	CHEV_2_143730631	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48213870					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143746815 () rs orientation: forward

Symbol	Name	Function Class
Rr566332	regulatory region 566332	739 bp distal
Rr566333	regulatory region 566333	177 bp proximal