rs48212607 SNP Detail

Summary

• ID
  rs48212607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGAGAG TTTACAAACT
  ATTTATAAAA ACAAGCAAAC AAGCAAACAA CCCTTGATTA TCGTTTAGAA TGCAAACACC
  ATCTGTAAAT TCCAGAACCA TTTCCCTGGA TCTCAGGTTC TGAAGCCCCA GTGTCATGGA
  GGGTCACAAG GGTTAAGAGA AGCAGACCAG AGTCCACGAA GGCTTAGTTC TGTTTCTCTA
  Y
  TTGGAAGGCC TGGGAGACAA GGACAGCTAG CAACGTCGCC TGTGCCGGTG CCGGTGCCGG
  TGCCGGTGCC GGTGCCGGTG CCGGTGCCGT TTGTCTAAGC AACCACCTTA CTGACTTAAA
  ACTCTATGTA GACTTACAGT GATGGCCTGG AGTCTTCCCT TCACCAGCTC AGCTTCTTCC
  ATTCTAGAAG TCAAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435449	NES15933259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48212607					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435449	NES15933259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			mRNA-UTR
Cpgi13743	CpG island 13743			233 bp proximal
Gm52613	predicted gene, 52613			347 bp downstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1725 bp distal
Rr583815	regulatory region 583815			1156 bp distal
Rr583816	regulatory region 583816			1553 bp distal
Rr583817	regulatory region 583817			83 bp distal
Rr583818	regulatory region 583818			488 bp proximal
Tssr35360	transcription start site region 35360			178 bp downstream
Tssr35361	transcription start site region 35361			203 bp downstream
Tssr35362	transcription start site region 35362			268 bp downstream
Tssr35363	transcription start site region 35363			316 bp downstream
Tssr35364	transcription start site region 35364			352 bp downstream
Tssr35365	transcription start site region 35365			412 bp downstream
Tssr35366	transcription start site region 35366			430 bp downstream
Tssr35367	transcription start site region 35367			467 bp downstream
Tssr35368	transcription start site region 35368			568 bp downstream
Tssr35369	transcription start site region 35369			609 bp downstream
Tssr35370	transcription start site region 35370			652 bp downstream
Tssr35371	transcription start site region 35371			1154 bp downstream