rs48210619 SNP Detail

Summary

• ID
  rs48210619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95041392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC CGCCTCCAGC GCCCTGAGGG
  R
  GCCTGCATTT CCTACAATAC TTTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135510086	ENSMUSSNP607349	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48210619					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95041392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	26 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	within coordinates
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	7 bp upstream
Rr367480	regulatory region 367480	within coordinates
Rr580822	regulatory region 580822	1492 bp distal
Rr580823	regulatory region 580823	within coordinates
Rr580824	regulatory region 580824	18 bp proximal
Rr580825	regulatory region 580825	1669 bp proximal
Scnm1	sodium channel modifier 1	107 bp upstream
Tssr34419	transcription start site region 34419	168 bp upstream
Tssr34420	transcription start site region 34420	93 bp upstream
Tssr34421	transcription start site region 34421	64 bp upstream