rs48209677 SNP Detail

Summary

• ID
  rs48209677
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156840616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACAAAGC AGATTTTGAT GAAAGAAAAA TATGCCTTAG
  TCAGTTGGCA GGATCCTTCT CTGCTCGGCC CACCACACTG CACTGTTTTG GGGGTGCCTG
  G
  CAGAGGGACA TTTGAGGAGT ATGGGTGTTT GTATGTTTGA GTCCAAAGGA GAACGCCAGC
  TCAGAAGTAA ATATTTGTCC TGTTGACTAC TAATTCTGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145811825	ENSMUSSNP3320722	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48209677					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156840616 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	within coordinates
Rr421310	regulatory region 421310	within coordinates