rs48205244 SNP Detail

Summary

• ID
  rs48205244
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77002664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTCCAA TGTCTCCAAC GCGGGTGTTG TCCCTTCATA
  CCATGTTGCC TCCTGAAGCT ACCAGAGGCA ATATGTGAGA TCCAGATTCA AAGCCAGAGC
  M
  AGGTGCAAGG ATGTCCCGCA TTCATTAATT CATGCCCACT GCAGGGCATG TGTTCAGTCT
  GTGAGGTGGA CAACGGGAAG GTCAGAGATT TGAAGAAAGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373588	NES15269442	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48205244					SNP	C	C	C	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373588	NES15269442	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77002664 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	313 bp upstream
Cpgi1754	CpG island 1754	122 bp distal
Gm67721	predicted gene, 67721	within coordinates
Rr384956	regulatory region 384956	543 bp upstream
Rr434420	regulatory region 434420	180 bp distal
Rr434421	regulatory region 434421	within coordinates
Tssr94211	transcription start site region 94211	184 bp downstream
Tssr98227	transcription start site region 98227	306 bp upstream
Tssr98228	transcription start site region 98228	274 bp upstream