rs48203224 SNP Detail

Summary

• ID
  rs48203224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55679093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGCAGAAG AATATTTGGT
  CTATGGGGGA GTTGTAAGAA ACATGTAAAC AACAACAACA ACAAAGACCC TACTATTTAA
  TGCTCAATCA AGAGATACAG ATATTTCCTC TGAGGGGCTT CAAAGGCAGT GCTAAACTTT
  TATGCTTGTC CCTATGTGTT TCCAGTCTTC ACAGTTGCTC CCAATCCCGT TTATCAGCTT
  Y
  GATTCTTTTC GAATGACTAA AGGGTAAGTC ATGGTTATTT GTCTAGGTCT TACTTTTAGC
  CCGTGGATGT AGATTAGTAT TTGATTTTTA TAAAATCACA AAGGATTAAT ATTTTAGTAG
  CTCTTTCAAA CCTGTTAAAC ATAAAGACCA ATTTTAAAGC AAAGTAAAAA CAAACAAACA
  AACAAAAAAA CCAAACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133214603	ENSMUSSNP6810229	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48203224					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55679093 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1591 bp proximal
Rr631015	regulatory region 631015	804 bp distal
Rr631016	regulatory region 631016	1733 bp proximal